BtaEX6000894 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57237833-57248632:+
Coord C1 exon
chr1:57237833-57237963
Coord A exon
chr1:57240361-57240473
Coord C2 exon
chr1:57248526-57248632
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTACTGGATATTTTTTTCAGAAT
3' ss Score
6.93
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
AATTTGTGAACCTGCAAGAACATTAAAATCATTTGTTTCCACAAATAATCTCATGTTGGTGACATTTAAGTCTCCTCAGGTATGGAGGCTATCAGGAATTTGGGCATATTTTGAAGTCATCCCAGAGCAAA
Seq A exon
AATGTGAAAACACAGTGTTGGTCAAAGAAATCACTGGTTTTGAAGGGAAAATTTCAAGTCCATATTACCCAAGCTACTGTCCTCCGAAATGCAAGTGTACCTGGAAATTTCAG
Seq C2 exon
TCTCCCCTGTCAACTCTTGGCATAGCACTGAAATTCCATAACTATTCAATAACCAAGAAGAGTATGAAAGGCTGTGACCATGGATGGTGGGAAATTAATGACCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.3=82.2)
A:
PF0043115=CUB=PU(33.3=94.7)
C2:
PF0043115=CUB=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTGTGAACCTGCAAGAACA
R:
TGGTCATTAATTTCCCACCATCCA
Band lengths:
235-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]