GgaEX6003948 @ galGal3
Exon Skipping
Gene
ENSGALG00000015389 | E1C7W0_CHICK
Description
NA
Coordinates
chr1:91902212-91905783:+
Coord C1 exon
chr1:91902212-91902342
Coord A exon
chr1:91903572-91903684
Coord C2 exon
chr1:91905677-91905783
Length
113 bp
Sequences
Splice sites
3' ss Seq
GCTCCTCTTTTTTTCTCTAGGGT
3' ss Score
11.31
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
AGCTTGCGAACCAGCTGATTCCTTGGTGTCACTTGTGTCCACGAATAATCTCATGCTGGTAATATTTAAGGCAGCACACATAAAGGAACAGAAGGGATTCCACGGCTATTTTGAGGTCATCACACAAGAAA
Seq A exon
GGTGTGGAAAAGCCATAGTGACAAAAGAGAGAATTGGCTATGAAGGGAGAATCACAAGTCCTTATTACCCAAGCTATTACCCTCCAAAATGTCTCTGTGTGTGGAACTTCCAG
Seq C2 exon
ACTCCGCAGAAGAACCTTGGTATAGCTCTGAAGTTTCATAACTATACCATCAGTGAGAAGAATATTAAAGGCTGTGAGCGAGGATGGTGGAAAATTAATGAACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(37.4=82.2)
A:
PF0043115=CUB=PU(32.4=94.7)
C2:
PF0043115=CUB=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCGAACCAGCTGATTC
R:
GTTCATTAATTTTCCACCATCCTCGC
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]