DreEX6094962 @ danRer10
Exon Skipping
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21706287-21706804:-
Coord C1 exon
chr24:21706680-21706804
Coord A exon
chr24:21706489-21706601
Coord C2 exon
chr24:21706287-21706393
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCTTTCCCATGCAGAGT
3' ss Score
10.59
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTTTTGTGAATCAGTGTCAGCCCCAATCTCATTGGTCTCCACCTCCAATGTCATGCTGCTCTCCTTCAGACTTACACAAGGCAGCAAGGTCTTCCGAGGATTTTTCCAAGCTCTTATGGAAGAGC
Seq A exon
AGTGTATTAATATGATAGCATTGCCTGATGGCCTAGGCGATGCTGGAACAATAACCAGTCCATTTTACCCCAGTCTGTTGCCCCGTCTGTGCTCCTGCACCTGGATGTTTCAG
Seq C2 exon
GCGGTCAGTGGTTCTCTGGGTGTGGCTCTCAGGTTCCAGAATTACATGCTAAAGCTAAAAGACTCACAGAATTGTGAACACGGCTGGTGGAAAGTCAATGAGATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161-'7-8,'7-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.1=86.0)
A:
PF0043115=CUB=PU(25.7=68.4)
C2:
PF0043115=CUB=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGAATCAGTGTCAGCCCC
R:
TCTCATTGACTTTCCACCAGCC
Band lengths:
226-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]