HsaEX6057636 @ hg19
Exon Skipping
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111768691-111775978:+
Coord C1 exon
chr3:111768691-111768821
Coord A exon
chr3:111769518-111769630
Coord C2 exon
chr3:111775872-111775978
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCACTGGGTATCTTTTCCAGAGT
3' ss Score
7.59
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
AATTTGTGAACCCACAAGAACATTAATGTCATTTGTTTCTACAAATAATCTCATGTTGGTGACATTTAAGTCTCCTCATATACGGAGGCTCTCAGGAATCCGGGCATATTTTGAGGTCATTCCAGAACAAA
Seq A exon
AGTGTGAAAACACAGTGTTGGTCAAAGACATCACTGGCTTTGAAGGGAAAATTTCAAGCCCATATTACCCGAGCTACTATCCTCCAAAATGCAAGTGTACCTGGAAATTTCAG
Seq C2 exon
ACTTCTCTATCAACTCTTGGCATAGCACTGAAATTCTATAACTATTCAATAACCAAGAAGAGTATGAAAGGCTGTGAGCATGGATGGTGGGAAATTAATGAGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-'13-19,'13-18,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.3=82.2)
A:
PF0043115=CUB=PU(32.4=94.7)
C2:
PF0043115=CUB=FE(31.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCACAAGAACATTAATGTCA
R:
TGCTCATTAATTTCCCACCATCCA
Band lengths:
230-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)