GgaEX6003948 @ galGal4
Exon Skipping
Gene
ENSGALG00000015389 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:87996899-88000470:+
Coord C1 exon
chr1:87996899-87997029
Coord A exon
chr1:87998259-87998371
Coord C2 exon
chr1:88000364-88000470
Length
113 bp
Sequences
Splice sites
3' ss Seq
GCTCCTCTTTTTTTCTCTAGGGT
3' ss Score
11.31
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
AGCTTGCGAACCAGCTGATTCCTTGGTGTCACTTGTGTCCACGAATAATCTCATGCTGGTAATATTTAAGGCAGCACACATAAAGGAACAGAAGGGATTCCACGGCTATTTTGAGGTCATCACACAAGAAA
Seq A exon
GGTGTGGAAAAGCCATAGTGACAAAAGAGAGAATTGGCTATGAAGGGAGAATCACAAGTCCTTATTACCCAAGCTATTACCCTCCAAAATGTCTCTGTGTGTGGAACTTCCAG
Seq C2 exon
ACTCCGCAGAAGAACCTTGGTATAGCTCTGAAGTTTCATAACTATACCATCAGTGAGAAGAATATTAAAGGCTGTGAGCGAGGATGGTGGAAAATTAATGAACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389-'10-12,'10-10,12-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(37.4=82.2)
A:
PF0043115=CUB=PU(32.4=94.7)
C2:
PF0043115=CUB=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCGAACCAGCTGATTC
R:
GTTCATTAATTTTCCACCATCCTCGC
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]