RnoEX6056996 @ rn6
Exon Skipping
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60116011-60122165:+
Coord C1 exon
chr11:60116011-60116141
Coord A exon
chr11:60117948-60118060
Coord C2 exon
chr11:60122059-60122165
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGACCCTTCTTTCAGAAT
3' ss Score
7.71
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AATCTGTGAACCCACAAGGACACTAATGTCCTTCGTTTCTACAAATAATCTCATGTTGGTGACACTGAAGTCTCCTTATGTACGGAGGCTGGCAGGGATCCGGGCATATTTTGAAGTCATTCCAGAACAAA
Seq A exon
AATGTGAAAATACAATACTGGTCAAAGAAATCAACAGCTTTGAAGGGAAAATCTCAAGTCCCTATTACCCAAGCTACTATCCCCCGAAATGCAAGTGCAACTGGACATTTCAG
Seq C2 exon
ACTTCTCTATCAACTCTTGGCATAGCCCTAAAATTCCACAACTATTCCATAACTAAGAAGAGTATGAAAGGCTGTGAGCATGGCTGGTGGGAAATTAATGAACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.3=82.2)
A:
PF0043115=CUB=PU(34.3=94.7)
C2:
PF0043115=CUB=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCACAAGGACACTAATGT
R:
CATTAATTTCCCACCAGCCATGC
Band lengths:
226-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]