BtaEX6002713 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031561 | RSRC1
Description
Bos taurus arginine/serine-rich coiled-coil 1 (RSRC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075404]
Coordinates
chr1:109821738-109830180:-
Coord C1 exon
chr1:109830074-109830180
Coord A exon
chr1:109822949-109823101
Coord C2 exon
chr1:109821738-109822301
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAAAGTGTTTTATGTTTCAGGCA
3' ss Score
8.11
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
ACCAAACCACCCTGGTAGAACAAGTAAAAAGAGTCAAAGAAATTGAAGCCATTGAAAGTGATTCTTTTGTTCAGCAAACATTCAGATCAAGTAAAGAAATCAAAAAG
Seq A exon
GCAGTGGAAGCTAGTGAAGTGAAGCATGCAGCAACCACATCAGGACCCGCATCAGTGGTGGCTGATCCACCGAGTAATGAAAAGGAAATAGACCCAAGCAACATCCCTACTGCTATCAAGTACCAAGATGACAATTCTCTGGCTCATCCAAAT
Seq C2 exon
TTATTTATTGAGAAAGCTGATGCTGAGGAAAAATGGTTCAAGAGATTAATCGCTCTCCGACAAGAAAGGCTAATGGGCAGTCCTGTGGCCTAAAGTAATATTCATGTGGTTGAATTAACAGTAACATTGGAAATTTAGGTTTTTAAATCCTAGTATTAACTTTTTACTCTTAAAAATAATTTAGCTGATTATATAAAAAGGGTAATCTCATTTCATTCTTTTCTCATGTAGGCTCTACTAGTTGATTTGAACTTAAACATTGTGAATATTGAAACTAGTATAAAGTTTAAGAATGCATGAAAATGTCATACTGTTAATAAAGCTAATCCTAGAAGTATTAGTATTAAAATAAATGGTATACAGTAGTGTTTCTGAGTACAGTTTGAAAAATATCAAGTTGCTGTTTTAAGACACAATTTTGATTAGTCGTGAATATAAAAGAATCAAACTATATGCTGTATAAGTGTGAGATTTCATCTTCCATGTATTTTAAAACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031561-'17-25,'17-24,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.843 C2=0.100
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(15.9=100)
A:
PF154401=THRAP3_BCLAF1=FE(22.7=100)
C2:
PF154401=THRAP3_BCLAF1=PD(5.0=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCTGGTAGAACAAGTAAA
R:
CCAATGTTACTGTTAATTCAACCACA
Band lengths:
231-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]