GgaEX1050469 @ galGal3
Exon Skipping
Gene
ENSGALG00000009669 | RSRC1
Description
NA
Coordinates
chr9:24051984-24053847:-
Coord C1 exon
chr9:24053738-24053847
Coord A exon
chr9:24052679-24052825
Coord C2 exon
chr9:24051984-24052097
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCTTTCTTTTTAGTCA
3' ss Score
9.45
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TAGACCAAGCCACCCTGGTGGAGCAAGTGAAACGAGTGAAAGAAATTGAAGCTATTGAAAGTGACTCCTTTGTTCCACAGACATTCAGATCAAGTAAAGAAGTCAAAAAG
Seq A exon
TCAGTAGAGCCTCCCGAACTAAAATACGAACCTGTAACTGTAGGAGCAGGATCTGTCGAAGCATCTGCCCCTGAAAAAGAAACAGTACCTGCCAATATTCCTACTGCCATCAAATACCAGGATGATAATTCCTTAGCACATCCAAAT
Seq C2 exon
CTGTTTATTGAGAAGGCAGAAGCAGAAGAGAAGTGGTTCCAGAGGCTGATTGCTATGCGGCAGGAAAGGCTGATGGGCAGTCCAGTGGCCTGAGCAAACTGCTGCAACCACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009669-'11-15,'11-13,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.837 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCAAGCCACCCTGGTG
R:
CAGTGGTTGCAGCAGTTTGC
Band lengths:
223-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]