HsaEX6059261 @ hg19
Exon Skipping
Gene
ENSG00000174891 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:24152]
Coordinates
chr3:158254881-158262311:+
Coord C1 exon
chr3:158254881-158254987
Coord A exon
chr3:158261124-158261276
Coord C2 exon
chr3:158261972-158262311
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTTGTTTCTTTCAGTCA
3' ss Score
9.41
5' ss Seq
AATGTAATA
5' ss Score
-1.48
Exon sequences
Seq C1 exon
ACCAAGCCACCCTGGTAGAACAAGTAAAAAGAGTAAAAGAAATTGAAGCTATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGAAGTCAAAAAG
Seq A exon
TCAGTGGAACCTAGTGAAGTGAAACAAGCAACTTCAACATCAGGACCAGCATCAGCAGTTGCTGATCCACCCAGTACTGAAAAAGAAATAGATCCTACCAGCATCCCTACTGCTATCAAGTACCAAGATGACAATTCCCTGGCCCATCCAAAT
Seq C2 exon
TTATTTATCGAGAAAGCTGATGCTGAGGAAAAATGGTTCAAGAGATTAATTGCTCTCCGACAAGAAAGACTAATGGGCAGTCCTGTGGCCTAAGTAATATACATATAGTTGGATTGGATTGTCAGCAGTAACATTGGAAATTTAGGTTTTTAAATCCCAATATTAACTTTTTACTCTTAAAAAGAATTTTGCTGATTATATATAAAGGTAGTCTCATTTCATTTGTCTCTCATGTAGGCTTGAATATTTGTTAATTTGAATTAAATCAAACATTGTAAAAATTAAAACAAAATTTAAGATTGCATGAAAATGTTATACTGTTAATAAAGCTAAACATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-'21-26,'21-25,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=0.898 C2=0.150
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(15.4=100)
A:
PF154401=THRAP3_BCLAF1=FE(21.9=100)
C2:
PF154401=THRAP3_BCLAF1=PD(8.3=61.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCCTGGTAGAACAAGT
R:
TTCCAATGTTACTGCTGACAATCCA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)