DreEX0063589 @ danRer10
Exon Skipping
Gene
ENSDARG00000033987 | rsrc1
Description
arginine/serine-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2374]
Coordinates
chr15:2433967-2451863:+
Coord C1 exon
chr15:2433967-2434073
Coord A exon
chr15:2439303-2439413
Coord C2 exon
chr15:2450195-2451863
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTGTGTATTTATAGGTG
3' ss Score
8.63
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
AGGAAGTTTCTCTCGCGGAGCAGGTGAGGAGGATAAAGGATATCGAGGCCATCGAGAGCGACTCTTTTGTTCCTCAGGCTTTCAAATCATCCCGGGACGCCAGCAAG
Seq A exon
GTGACTGAATGTCCTGAAATAAAGACAGAGGCAGAGACTGTGAAGGTGGAAGTCAGCGTTCTGCCCACCTCCATCACTTACAATGACAGCGACACCCTGGCCCACCCTAAT
Seq C2 exon
CTGTTTGTGGATAAAGAGGAGGCTGAGAGGTTGTGGTTGAACAGACTGATCTCTCTACGTCAGGAGAGGCTCATGGGTAGTCCCGTATCCTGACCACAACTGTCAGACGGATGAAGATGCGGATTTCGCGTTTGCTTTTTGTAATTTTGATCTCAATAAAGGTGCGACTGCTCCACCTGCTGGTGTCTATGGGAAGGTGAAGCTTATTGGGCACACTGTAAAGACTATGCGAGATTCTCAAGTGTTTTCTGTTTATTTCCGGTTGTGAAATGCATTATGGGATGTTGATCTCTGCTCTGTCCACTTTTGATGTTGAAAATTCAAGTGACTTTTATTGACATTTTAGTTGTTTGGAATAACAATTTATAAGAAATATTACCTAGAGAAATAAGTCTGTACAATAACAGAAAGTGTGCTGCAGCTTATTACAAGGTTTTGTAGTGTAATATACAACACCAACCCAGAGAATGTCGCTCTGCACACTATTAAACATGTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033987_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.270 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTTCAAATCATCCCGGG
R:
TGTGCCCAATAAGCTTCACCT
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]