HsaEX6059261 @ hg38
Exon Skipping
Gene
ENSG00000174891 | RSRC1
Description
arginine and serine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]
Coordinates
chr3:158537092-158544522:+
Coord C1 exon
chr3:158537092-158537198
Coord A exon
chr3:158543335-158543487
Coord C2 exon
chr3:158544183-158544522
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTTGTTTCTTTCAGTCA
3' ss Score
9.41
5' ss Seq
AATGTAATA
5' ss Score
-1.48
Exon sequences
Seq C1 exon
ACCAAGCCACCCTGGTAGAACAAGTAAAAAGAGTAAAAGAAATTGAAGCTATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGAAGTCAAAAAG
Seq A exon
TCAGTGGAACCTAGTGAAGTGAAACAAGCAACTTCAACATCAGGACCAGCATCAGCAGTTGCTGATCCACCCAGTACTGAAAAAGAAATAGATCCTACCAGCATCCCTACTGCTATCAAGTACCAAGATGACAATTCCCTGGCCCATCCAAAT
Seq C2 exon
TTATTTATCGAGAAAGCTGATGCTGAGGAAAAATGGTTCAAGAGATTAATTGCTCTCCGACAAGAAAGACTAATGGGCAGTCCTGTGGCCTAAGTAATATACATATAGTTGGATTGGATTGTCAGCAGTAACATTGGAAATTTAGGTTTTTAAATCCCAATATTAACTTTTTACTCTTAAAAAGAATTTTGCTGATTATATATAAAGGTAGTCTCATTTCATTTGTCTCTCATGTAGGCTTGAATATTTGTTAATTTGAATTAAATCAAACATTGTAAAAATTAAAACAAAATTTAAGATTGCATGAAAATGTTATACTGTTAATAAAGCTAAACATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-'46-52,'46-50,49-52
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=0.898 C2=0.150
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(15.4=100)
A:
PF154401=THRAP3_BCLAF1=FE(21.9=100)
C2:
PF154401=THRAP3_BCLAF1=PD(8.3=61.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCCTGGTAGAACAAGT
R:
TTCCAATGTTACTGCTGACAATCCA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains