GgaEX1050469 @ galGal4
Exon Skipping
Gene
ENSGALG00000009669 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]
Coordinates
chr9:21958768-21960976:-
Coord C1 exon
chr9:21960867-21960976
Coord A exon
chr9:21959808-21959954
Coord C2 exon
chr9:21958768-21959226
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCTTTCTTTTTAGTCA
3' ss Score
9.45
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TAGACCAAGCCACCCTGGTGGAGCAAGTGAAACGAGTGAAAGAAATTGAAGCTATTGAAAGTGACTCCTTTGTTCCACAGACATTCAGATCAAGTAAAGAAGTCAAAAAG
Seq A exon
TCAGTAGAGCCTCCCGAACTAAAATACGAACCTGTAACTGTAGGAGCAGGATCTGTCGAAGCATCTGCCCCTGAAAAAGAAACAGTACCTGCCAATATTCCTACTGCCATCAAATACCAGGATGATAATTCCTTAGCACATCCAAAT
Seq C2 exon
CTGTTTATTGAGAAGGCAGAAGCAGAAGAGAAGTGGTTCCAGAGGCTGATTGCTATGCGGCAGGAAAGGCTGATGGGCAGTCCAGTGGCCTGAGCAAACTGCTGCAACCACTGTGTATGAGTTCTTTGTGAGCGCTATGGAATCCTACCATTAAATTGTTGTATTTTTCTCTTTTGAGAGGATTTTAATAGTCAGTAGGAGTTGTACAGAGAATAAATATTTCATCTGAATACACAAGAACGTTCCATCCTGCGTTTTTTCCCTAGCTCATTGCTGGGTTACTTGGGTTGCTGAGAAGGGAAGGCTATCATAGCAGTGTAATTTGCTTTTTTTTAATACTGGATTCCCCTTGGGTGCAGACTTGACAGCCCAAGGAGATGTAATTTTATACTTCCCAATCCTCCAAAAATATATAACCATGTAGCAGTTTAAAGATAAATGAAAAAAAATAAGACTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009669_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.786 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGCAAGTGAAACGAGT
R:
TGGTAGGATTCCATAGCGCTCA
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]