BtaEX6002859 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116255135-116277314:-
Coord C1 exon
chr1:116277144-116277314
Coord A exon
chr1:116265609-116265809
Coord C2 exon
chr1:116255135-116255392
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCTTATATTTTATTTTTCAGCCA
3' ss Score
8.78
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGTCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTGGAGATAAATGGGCGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTG
Seq A exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCTACCAATGCATCAGCAGCCTTTAATCCCTACCTGGGACCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTACCGACTGCACCAATGTTGGTTACAGGGAACCCTGGGGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATTAATGCGGACAGACAGACTTGAG
Seq C2 exon
GTATGTCGAGAGTACCAGCGAGGCAATTGCAACAGAGGAGAAAATGATTGTCGGTTTGCCCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACCGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCTCCCGCACATCTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCCGCAGCACAGGCTGCAGCCACTGCAGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564-'16-14,'16-13,19-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.095 A=0.791 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=25.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATCCACCCCCACACTT
R:
TGCACTTTTCCCGAGAGCATC
Band lengths:
296-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]