GgaEX0015490 @ galGal3
Exon Skipping
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24963620-24971640:-
Coord C1 exon
chr9:24971470-24971640
Coord A exon
chr9:24969640-24969840
Coord C2 exon
chr9:24963620-24963877
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTTCTGCTTGCAGCCC
3' ss Score
11.08
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGGCGATGTTCGAGGGAGAACTGCAAGTACCTTCACCCGCCGCCGCACTTAAAAACGCAGCTGGAGATCAATGGCCGCAATAACCTGATCCAGCAGAAGAACATGGCCATGCTGGCCCAGCAGATGCAGCTTGCCAATGCCATGATGCCCGGAGCCCCGCTGCAGCCTGTG
Seq A exon
CCCATGTTCTCCGTTGCGCCCAGCCTAGCCACCAATGCCTCGGCTGCCTTCAACCCCTACCTGGGGCCCGTGTCCCCAGGGCTGGTGCCGGCGGAGATCCTGCCCACCGCGCCCATGCTGGTGGCGGGCAACCCTGGTGTCCCGGTGCCTGCTGCCGCCGCTGCTGCTGCGCAGAAGCTGATGAGGACGGACAGGCTGGAG
Seq C2 exon
GTGTGTCGGGAGTACCAACGCGGGAACTGCAACCGGGGCGAGAACGACTGCCGGTTCGCTCACCCCGCCGACAGCGCCATGATCGACACCAACGATAACACCGTTACGGTCTGCATGGATTACATCAAAGGGAGATGCTCACGGGAAAAGTGCAAATACTTCCACCCTCCAGCACATCTGCAAGCCAAGATCAAGGCTGCCCAGTACCAGGTTAACCAGGCTGCAGCTGCCCAGGCAGCAGCGACGGCGGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (disopred):
C1=0.649 A=0.619 C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=25.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCAGCTGGAGATCAATGG
R:
TGTGCTGGAGGGTGGAAGTAT
Band lengths:
294-495
Functional annotations
There are 0 annotated functions for this event