RnoEX0053012 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150838385-150856223:+
Coord C1 exon
chr2:150838385-150838555
Coord A exon
chr2:150846527-150846727
Coord C2 exon
chr2:150855966-150856223
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTTTTAATTTCCAGCCA
3' ss Score
8.92
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTCGTTGCTCCAGAGAAAACTGCAAATATCTTCATCCACCCCCTCATTTAAAAACACAATTGGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAACGCCATGATGCCCGGTGCCCCACTGCAGCCCGTG
Seq A exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCCACCAATGCATCAGCAGCCTTTAATCCCTACCTGGGGCCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTGCCGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCCGGTGCCAGCAGCTGCTGCAGCTGCTGCACAGAAGTTAATGCGGACAGACAGACTGGAG
Seq C2 exon
GTGTGCCGAGAGTACCAGCGTGGCAATTGCAACCGAGGAGAAAATGACTGTCGATTTGCTCATCCTGCTGACAGCACAATGATTGATACCAATGACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCCCCCGCACACCTGCAAGCCAAGATCAAGGCTGCTCAATACCAGGTCAACCAGGCTGCAGCAGCGCAGGCTGCAGCTACTGCAGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076_MULTIEX1-5/11=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=25.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAACATGGCCATGCTGG
R:
CCTGGTTGACCTGGTATTGAGC
Band lengths:
297-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]