BtaEX6002862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116238831-116244760:-
Coord C1 exon
chr1:116244666-116244760
Coord A exon
chr1:116241607-116241681
Coord C2 exon
chr1:116238831-116239228
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATAATTTTTTATTTGCTAGATA
3' ss Score
6.07
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAATTTTCATCACTAAACA
Seq C2 exon
GAGAAAAAATCCAAACTGCAAATTATCCAAAGCAGTCACTTAGAGTATCTTCGTTTTTTTTGTTTTTTGGTTTTTTTCCGAACACATACTGTGCTAATCAAGCATTCACATAGAACAAATTGTGTTTAATAGGACTGTTTCATGGATTTTAATTTTGTGGGCCAAACCATTACTTCTGAAACCTATTAAACTTTAGAAAGAAGTAAAGTGAGTTGTAAATTCTGTCCCACAATGATAGTGCTAAAAGAGCTCTGCTGTATCATGCCCCTTGATTCTGCAAATGTATTTTATACTTTAAGCTGTGTATTGGCTGATATCTGTTCAGAGACTACAATTTTATGAAGCTGTGAGTGTCATTTTATTCTCAAAGAGACAATAAACACATTTTGGTCCTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564-'26-29,'26-28,29-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.819 A=0.500 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSBTAT00000005998fB4130
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCACAGCCAACCAG
R:
TGGCCCACAAAATTAAAATCCA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]