GgaEX1035309 @ galGal3
Exon Skipping
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24950173-24956773:-
Coord C1 exon
chr9:24956679-24956773
Coord A exon
chr9:24953672-24953746
Coord C2 exon
chr9:24950173-24952700
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTACATTTTTTTACCCATAGATA
3' ss Score
9.91
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCTGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACACAGATGTAGACATTTTGTCATCAAACA
Seq C2 exon
ATCATCACTGAGGAGAAAAGGACAGTGTGTTTGGGTTGAGGAAGGACAAGTTCATTAGCCATAATGTATATATCGTCAAGCCACACTCGGAACCCCCTCAGCAGTAAGACATCCACACATTGCATGTTAAGGAGACGAACGAGAACTTGGGAATCCACTGCACACTGTTGCCTATATACTTTGTACATTTAATTGATATTTGTGCTGAGGTGATCTTCTTGTCTAAGAACTACAACATTGTCTATCTTTTCTAGCGCAGGAGCGCGCGTACGCGCTCGGATTCGCGTGTGCGGCCAATTTCCTACATAACCGTGTATGTCACCTTGAAAAGACAGACTATGGTGTAACCATGAATCTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAGTAAGTTTATTTCTTTCAAGGTTTACAAATAACAAAGGTGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGTGTGCATGCACAGTAATTTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361-'9-8,'9-7,12-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.094 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTCTGCAGCAACAACA
R:
TCTTACTGCTGAGGGGGTTCC
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]