RnoEX6009686 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150864802-150869690:+
Coord C1 exon
chr2:150864802-150864896
Coord A exon
chr2:150867719-150867793
Coord C2 exon
chr2:150869458-150869690
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACAATTTTTTATTTGCTAGATA
3' ss Score
6.14
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAGCTGTCGTCACAAAACA
Seq C2 exon
ATCATACAAAGGAGGAAAGGACAGTGTGCTTGATTAGAGTAAGGACGAAGTCATTAGCCATTATTGTATATTACCCGTCAAGCAACACACACAAAAATCCCTCAGCCACAAGACATCCACATATTGCATGTTAACCAGAAGAAAAGACAACATGGGAACCTTTGCTGCACAGTTGCCTACACACTTTGTAACATCCCAATTGGTATTTGTGCTGAGGTGATATTCCTACTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076-'32-29,'32-28,35-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSRNOT00000088461fB8461
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTGCCACAAGTGTTCCC
R:
GTGGATGTCTTGTGGCTGAGG
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]