MmuEX6071144 @ mm9
Exon Skipping
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60426068-60432122:+
Coord C1 exon
chr3:60426068-60426162
Coord A exon
chr3:60429046-60429120
Coord C2 exon
chr3:60430302-60432122
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACGATTTTTTATTTGCTAGATA
3' ss Score
5.91
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAGCTGTCGTCACAAAACA
Seq C2 exon
ATCATACAAAGAGGAAAGGACAGTGTGCTTGATTAGAGTAAGGACGACGTCATTAGCCATATTGTATATACCGTCAAGCAACACATACAAAAATCCCTCAGCCACAAGACATCCACATATTGCATGTTAACCAGAAGAAACGACAACATGGGAACCTGCTGCACACTGTTGCCTACACACTTTGTACATTCAGTTGGTATTTGTGCTGAGGTGATATTCCTATCTAAAACAACAACATTGTCTTTCTTTTGTAGCACAGAGTTATGCATTAAAATATGCATACGTAATTAGTTTCCTATATATTCATGCCATCTTGAAAAGACAGACTATGGTGTGACCATGATTCTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAAATAAGTTTATTTCTTTCAAGGTTTACAAGTAACCAAGGTGCACCTTGTATTTAAAATCGCCGTTAGAGCTGAGAGCGCGCATGCAGAGTCATTTTTGTTTGAGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763-'15-18,'15-17,17-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.969 A=0.354 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCGCAGCAACAACATCTG
R:
GTGGATGTCTTGTGGCTGAGG
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: