GgaEX1035309 @ galGal4
Exon Skipping
Gene
ENSGALG00000010361 | MBNL1
Description
Muscleblind-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKW9]
Coordinates
chr9:22845454-22852054:-
Coord C1 exon
chr9:22851960-22852054
Coord A exon
chr9:22848953-22849027
Coord C2 exon
chr9:22845454-22847981
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTACATTTTTTTACCCATAGATA
3' ss Score
9.91
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCTGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACACAGATGTAGACATTTTGTCATCAAACA
Seq C2 exon
ATCATCACTGAGGAGAAAAGGACAGTGTGTTTGGGTTGAGGAAGGACAAGTTCATTAGCCATAATGTATATATCGTCAAGCCACACTCGGAACCCCCTCAGCAGTAAGACATCCACACATTGCATGTTAAGGAGACGAACGAGAACTTGGGAATCCACTGCACACTGTTGCCTATATACTTTGTACATTTAATTGATATTTGTGCTGAGGTGATCTTCTTGTCTAAGAACTACAACATTGTCTATCTTTTCTAGCGCAGGAGCGCGCGTACGCGCTCGGATTCGCGTGTGCGGCCAATTTCCTACATAACCGTGTATGTCACCTTGAAAAGACAGACTATGGTGTAACCATGAATCTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAGTAAGTTTATTTCTTTCAAGGTTTACAAATAACAAAGGTGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGTGTGCATGCACAGTAATTTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361_MULTIEX1-7/7=6-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.969 A=0.083 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTCTGCAGCAACAACA
R:
TCTTACTGCTGAGGGGGTTCC
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]