BtaEX6003173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:128016831-128026833:+
Coord C1 exon
chr1:128016831-128016982
Coord A exon
chr1:128020824-128020990
Coord C2 exon
chr1:128026728-128026833
Length
167 bp
Sequences
Splice sites
3' ss Seq
AACTCTGTTTCCTGATACAGGTT
3' ss Score
8.85
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAAATCGCTTTCAAAAACCTGGTACAAAGAAATCGGCAAAATGAACAGCAGAACCAGGGCCCTCCAGCTCTGAACTCCACCATTCAGCTGCCATTTATAATCATCAACACAAGCAGAAAAACAGTCATAGACTGCAGCATCTCCAGTGACAA
Seq A exon
GTTTGAATATCTTTTTAATTTTGACAACACCTTCGAGATTCATGATGACATAGAAGTGCTGAAGCGAATGGGGATGTCCTTCGGCCTGGAGTCAGGCAAATGCTCATTGGAGGATCTGAAACTTGCTAAATCACTGGTGCCCAAGGCTTTAGAAGGCTATATAACAG
Seq C2 exon
ACATCTCCACAGGACCATCTTGGTTAAATCAGGGACTGCTTTTGAACTCTACCCAATCCGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTGTCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222-'19-24,'19-22,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.7=100)
A:
PF087815=DP=FE(38.9=100)
C2:
PF087815=DP=PD(4.9=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTTCAAAAACCTGGTACA
R:
CAAGGTGGCACCAGTGGTC
Band lengths:
243-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]