DreEX6037338 @ danRer10
Exon Skipping
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35153861-35155943:+
Coord C1 exon
chr9:35153861-35154012
Coord A exon
chr9:35155592-35155758
Coord C2 exon
chr9:35155862-35155943
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCCTTTTGTGGTTAGGTT
3' ss Score
8.53
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAAATTGCTTTTAAGAACCTTGTACAGAGAAACCGCCAGAGAGAACAACAGACAAAAAGGCCCCCACCTGCCAACTCAGTCATTCACCTGCCATTTATTATCGTCAACACCAGCAAGAAAACAGTCATTGACTGCAGCATTTCCAATGACAA
Seq A exon
GTTTGAGTACCTCTTCAACTTTGATAGCATGTTTGAGATTCACGATGACATTGAGGTATTGAAGCGCATGGGCATGGCTTGTGGTCTTGAGGTGGGCAAGTGCTCTGCTGAAGACCTGAAGACTGCTAGGAGCTTGGTGCCCAAAGCCCTGGAGCCTTATGTCACAG
Seq C2 exon
AAATGGCACAGGGACCTATCAGTAATGTCTACATGACGGGGGCTTCATCTGCAAATGGAGGTGGCCGCTATCATGTAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293-'18-15,'18-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.018 C2=0.393
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTGCTTTTAAGAACCTTGTACA
R:
CCTCCTACATGATAGCGGCCA
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]