GgaEX0024914 @ galGal3
Exon Skipping
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141541362-141543222:-
Coord C1 exon
chr1:141543071-141543222
Coord A exon
chr1:141542055-141542221
Coord C2 exon
chr1:141541362-141541443
Length
167 bp
Sequences
Splice sites
3' ss Seq
GAGACGTTTTTCCTCTACAGGTT
3' ss Score
9.52
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACCTCGTTCAGCGAAATCGTCAGGCAGAACAGCAGGCAAATCGACCGCCACCTTCCAATTCTGTCATCCATTTGCCATTCATCATTGTGAACACCAGCAAGAAAACAGTGATCGATTGCAGTATTTCAAATGACAA
Seq A exon
GTTTGAGTATCTATTTAATTTTGACAATACTTTTGAAATTCATGATGATATAGAAGTACTAAAACGAATGGGAATGGCCTGTGGGCTAGAATCTGGAAGCTGTTCAGCAGAGGACCTAAAAATTGCAAGGAGTTTGGTTCCCAAAGCTTTGGAACCATATGTGACAG
Seq C2 exon
AAATGGCTCAGGGATCAATCAGCAGTGTATATGTCACATCTTCGTCAGGTTCCACATCAAATGGCACAAGATTTTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'15-15,'15-13,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTGCCTTCAAGAACCTCGT
R:
CTGGCTGAAAATCTTGTGCCA
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]