HsaEX6041255 @ hg19
Exon Skipping
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749]
Coordinates
chr13:114290292-114292211:+
Coord C1 exon
chr13:114290292-114290443
Coord A exon
chr13:114290849-114291015
Coord C2 exon
chr13:114292133-114292211
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCCTTTCCCCTTCAGATT
3' ss Score
12.53
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACCTGGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAGCAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAA
Seq A exon
ATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAG
Seq C2 exon
AAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-'16-16,'16-13,17-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=29.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTCAAGAACCTGGTGC
R:
CTGGCAGAGAACCTTGTGCC
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)