HsaEX6041255 @ hg38
Exon Skipping
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
Coordinates
chr13:113635977-113637896:+
Coord C1 exon
chr13:113635977-113636128
Coord A exon
chr13:113636534-113636700
Coord C2 exon
chr13:113637818-113637896
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCCTTTCCCCTTCAGATT
3' ss Score
12.53
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACCTGGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAGCAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAA
Seq A exon
ATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAG
Seq C2 exon
AAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-'43-32,'43-25,44-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.000 C2=0.102
Domain overlap (PFAM):
C1:
PF087815=DP=PD(13.9=71.4)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=29.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTCAAGAACCTGGTGC
R:
CTGGCAGAGAACCTTGTGCC
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains