GgaEX0024914 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136650568-136652428:-
Coord C1 exon
chr1:136652277-136652428
Coord A exon
chr1:136651261-136651427
Coord C2 exon
chr1:136650568-136650649
Length
167 bp
Sequences
Splice sites
3' ss Seq
GAGACGTTTTTCCTCTACAGGTT
3' ss Score
9.52
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CAAATTGCCTTCAAGAACCTCGTTCAGCGAAATCGTCAGGCAGAACAGCAGGCAAATCGACCGCCACCTTCCAATTCTGTCATCCATTTGCCATTCATCATTGTGAACACCAGCAAGAAAACAGTGATCGATTGCAGTATTTCAAATGACAA
Seq A exon
GTTTGAGTATCTATTTAATTTTGACAATACTTTTGAAATTCATGATGATATAGAAGTACTAAAACGAATGGGAATGGCCTGTGGGCTAGAATCTGGAAGCTGTTCAGCAGAGGACCTAAAAATTGCAAGGAGTTTGGTTCCCAAAGCTTTGGAACCATATGTGACAG
Seq C2 exon
AAATGGCTCAGGGATCAATCAGCAGTGTATATGTCACATCTTCGTCAGGTTCCACATCAAATGGCACAAGATTTTCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTGCCTTCAAGAACCTCGT
R:
CTGGCTGAAAATCTTGTGCCA
Band lengths:
234-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]