DreEX6029761 @ danRer10
Exon Skipping
Gene
ENSDARG00000016304 | tfdp1b
Description
transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
Coordinates
chr1:242094-243499:+
Coord C1 exon
chr1:242094-242245
Coord A exon
chr1:242829-242995
Coord C2 exon
chr1:243448-243499
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTTCTGTGTCTGCAGGTT
3' ss Score
10.57
5' ss Seq
CCGGTATGA
5' ss Score
8.14
Exon sequences
Seq C1 exon
CAAATCGCCTTCAAGAACCTGGTTCAGCGTAACCGTGAGGTGGAGCAGCAGAGTAAGAGATCTCCATCTGCAAACACCATCATCCAGCTGCCCTTCATCATCATCAACACCAGCAAGAAGACCATCATCGACTGCAGCATCTCTAATGACAA
Seq A exon
GTTCGAGTATCTGTTCAACTTCGACAGCATGTTCGAGATCCACGATGATGTGGAGGTGCTGAAGCGGCTGGGTCTGGCGTTGGGTCTGGAGTCGGGCCGCTGCAGTGCGGAGCAGATGAAGATCGCCACATCACTGGTGTCTAAAGCTCTGCAGCCCTATGTCACCG
Seq C2 exon
AGATGGCGCAGGGCTCCGTCAACCAGCCGATGGATTTTTCCCATGTGGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016304-'27-21,'27-19,30-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=0.000 C2=0.343
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGCCTTCAAGAACCTGGT
R:
GCAGCCACATGGGAAAAATCC
Band lengths:
202-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]