BtaEX6057617 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90751039-90752403:+
Coord C1 exon
chr12:90751039-90751190
Coord A exon
chr12:90751577-90751743
Coord C2 exon
chr12:90752325-90752403
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACGGCGACCATCGCCTCCAGGTT
3' ss Score
5.87
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CAAATCGCCTTCAAGAACCTGGTGCAGAGGAACCGCCAGGTGGAGCAGCAGGCCAGCCGGCCGCCCCCGCCCAACTCTGTCATCCACTTGCCTTTCATCATCGTGAACACCAGCAAGAAGACGGTCATCGACTGCAGCATTTCAAACGACAA
Seq A exon
GTTTGAGTACCTGTTCAATTTCGACAACACGTTTGAGATCCATGACGACATCGAGGTGCTGAAGCGCATGGGCATGGCCTGCGGGCTGGAGTCCGGGAGCTGCTCCCCCGAGGACCTGAGGGTGGCCAGGAGCTTGGTGCCGAAGGCGCTGGAGCCTTACGTGACAG
Seq C2 exon
AGATGGCTCAGGGATCCCTCGGCGGTGTGTTTGTCGCGTCGGCAGTGTCGACCTCTAACGGCACGCGGCTGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.7=100)
A:
PF087815=DP=FE(38.9=100)
C2:
PF087815=DP=PD(4.9=25.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGCCTTCAAGAACCTGGT
R:
CGCGTGCCGTTAGAGGTC
Band lengths:
218-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]