RnoEX0090074 @ rn6
Exon Skipping
Gene
ENSRNOG00000011241 | Tfdp2
Description
transcription factor Dp-2 [Source:RGD Symbol;Acc:1305814]
Coordinates
chr8:104163899-104175142:+
Coord C1 exon
chr8:104163899-104164050
Coord A exon
chr8:104167864-104168030
Coord C2 exon
chr8:104175037-104175142
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGCTTTATTTTGCAGGTT
3' ss Score
11.66
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CAAATTGCTTTTAAAAACCTGGTACAGAGAAATCGACAAAATGAACAACAAAACCAGGGCCCTCCAGCTGTGAATTCCACCATTCAGCTGCCATTTATAGTCATTAATACAAGCAGGAAAACAGTCATAGACTGCAGCATCTCCAGTGACAA
Seq A exon
GTTTGAATACCTCTTTAATTTTGATAACACCTTTGAGATCCATGATGACATAGAGGTACTGAAGCGGATGGGAATGTCCTTTGGTCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAAATCGCAAAATCCCTGGTTCCAAAAGCTTTAGAAGGCTATATCACAG
Seq C2 exon
ACGTCTCTACAGGACCTTCTTGGTTAAATCAGGGACTACTTTTGAACTCTACCCAATCAGTTTCAAATTTAGACCCGACCACCGGTGCCACTGTACCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011241-'37-40,'37-37,38-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.7=100)
A:
PF087815=DP=FE(38.9=100)
C2:
PF087815=DP=PD(4.9=19.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATTGCTTTTAAAAACCTGGTACA
R:
TTGATTGGGGTACAGTGGCAC
Band lengths:
257-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]