HsaEX6058865 @ hg19
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751]
Coordinates
chr3:141671753-141682805:-
Coord C1 exon
chr3:141682654-141682805
Coord A exon
chr3:141678516-141678682
Coord C2 exon
chr3:141671753-141671858
Length
167 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTTTCCTGATGCAGGTT
3' ss Score
8.76
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAAATCGCTTTCAAAAACCTGGTACAGAGAAATCGACAAAATGAGCAGCAAAACCAGGGCCCGCCGGCTCTGAACTCTACCATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAAAACAGTCATAGATTGCAGCATCTCCAGTGACAA
Seq A exon
GTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAGATCCATGATGACATAGAAGTACTAAAGCGGATGGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAACTTGCGAAATCCCTGGTGCCAAAGGCTTTAGAAGGTTATATCACAG
Seq C2 exon
ATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTACCCCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126-'35-35,'35-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.7=100)
A:
PF087815=DP=FE(38.9=100)
C2:
PF087815=DP=PD(4.9=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTTCAAAAACCTGGTACA
R:
TAAGGTGGCACCAGTGGTCAG
Band lengths:
243-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)