GgaEX1058184 @ galGal3
Exon Skipping
Gene
ENSGALG00000002753 | F1N8A4_CHICK
Description
NA
Coordinates
chr9:11425524-11434115:-
Coord C1 exon
chr9:11433964-11434115
Coord A exon
chr9:11430389-11430555
Coord C2 exon
chr9:11425524-11425623
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTTGACTTCTTAAATACAGATT
3' ss Score
5.67
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CAAATAGCATTCAAAAACTTGGTACAAAGAAATCAGCAAAATGAACAACAAAATCGAGGCCCCCCAGCATCAAATTCCACAATACAGCTGCCTTTCTTAATCGTCAACACTAGCAAGAGAACCGTTATTGACTGCAGCATATCAAGTGACAA
Seq A exon
ATTTGAATACCTCTTCAATTTCGATAATGCTTTTGAGATTCATGATGACAGTGAGGTGCTGAAAAGAATGGGAATGTCCTTTGGGCTTGAGGAAGGCAAATGCTCAGCTGAAGACCTAAGAACTGCAAAATCTCTGGTGCCAAAAGCTTTAGAAGGCTACATCACTG
Seq C2 exon
ATATGTCTACAGGATTGTCATGGATGAACCAAGGATTACTTTCAGCACAAGCAGTTTCACATTCAGAGATAGCAGGAGGCACTTCTGATTCAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002753-'18-21,'18-18,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.412
Domain overlap (PFAM):
C1:
PF087815=DP=FE(34.5=100)
A:
PF087815=DP=FE(38.6=100)
C2:
PF087815=DP=PD(5.5=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATAGCATTCAAAAACTTGGTACA
R:
TGAATCAGAAGTGCCTCCTGC
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]