BtaEX6003663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141774382-141795458:-
Coord C1 exon
chr1:141795388-141795458
Coord A exon
chr1:141776191-141776431
Coord C2 exon
chr1:141774382-141774528
Length
241 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTGCTGCTTAGGCT
3' ss Score
7.84
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
CTCCTGACGGCCCACCTCAGGAAGTCCACCTGGAGCCCATCTCTTCCCAGAGCATCAGGGTCACCTGGAAG
Seq A exon
GCTCCCAAGAAACATTTGCAAAACGGGATTATCCGTGGCTACCAGATCGGTTACCGGGAGTACAGCACCGGGGGCAACTTCCAGTTCAACATCATCAGTATCGACACCACGGGGGACAGTGAGATTTACACCCTGGACAACCTCAACAAGTTCACCCAGTATGGCCTGGTGGTGCAGGCCTGCAACCGGGCCGGGACGGGGCCTTCTTCTCAGGAAATCATCACCACCACCCTCGAGGACG
Seq C2 exon
TGCCCAGTTACCCCCCCGAAAATGTTCAAGCCATAGCAACATCACCAGAAAGCATATCAATATCCTGGTCCACGCTTTCCAAGGAAGCCTTGAATGGAATTCTCCAGGGGTTCAGAGTCATTTACTGGGCCAACCTCATGGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.136 C2=0.140
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(22.0=83.3)
A:
PF0004116=fn3=PD(75.8=85.2)
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGACGGCCCACCTC
R:
TCCATGAGGTTGGCCCAGTAA
Band lengths:
213-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]