GgaEX6004383 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107683028-107690805:-
Coord C1 exon
chr1:107690735-107690805
Coord A exon
chr1:107684857-107685097
Coord C2 exon
chr1:107683028-107683174
Length
241 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCATATCCTGTTTAGGCT
3' ss Score
8.28
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CTCCTGATGGTCCACCCCAGGATGTTCAGCTTGAGCCTATATCTTCACAAAGCATTAGGGTCACCTGGAAG
Seq A exon
GCTCCGAAGAAGCACTTGCAAAATGGAATAATTCGTGGATACCAGATAGGTTATCGGGAGTACAGTGCAGGTGGCAATTTCCAGTTCAACATCATCAGTATTGATACCACAGGGGACAGCGAAGTTTATACCCTGAATAACCTGAAGAAATTCACACAATATGGCATGGTAGTTCAAGCTTGTAACCGGGCTGGAATAGGACCTTCTTCTCAGGAAATCATCACCACTACTCTTGAGGATG
Seq C2 exon
TTCCCAGCTGCCCTCCAGGGAACGTGCAAGCCACTGCCACATCACCAGAAACCATTTCTATTTCTTGGTCAACGCTGGCAAAAGAAACTCTGAATGGGATTCTGCAAGGATTCAGGGTTATCTACTGGGCCAATCTCTTGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.074 C2=0.200
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(22.0=83.3)
A:
PF0004116=fn3=PD(75.8=85.2)
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTCCACCCCAGGATGTT
R:
TCCATCCAAGAGATTGGCCCA
Band lengths:
212-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]