RnoEX0029927 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37098521-37111785:-
Coord C1 exon
chr11:37111715-37111785
Coord A exon
chr11:37100058-37100298
Coord C2 exon
chr11:37098521-37098667
Length
241 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTGCTGTTTAGGCT
3' ss Score
8.72
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
CTCCTGATGGTCCACCTCAGGAAGTGCACCTGGAACCCACCTCATCTCAGAGTATCAGGGTTACCTGGAAG
Seq A exon
GCTCCCAAGAAACATTTACAAAATGGGATCATACGTGGCTACCAGATAGGCTACCGGGAGTACAGCACCGGGGGCAACTTCCAGTTCAACATCATCAGTATCGACACCACCGGGGACAGCGAAGTGTACACCCTGGACAACCTGAATAAGTTCACCCAGTATGGCCTAGTAGTACAGGCCTGCAACCGGGCCGGCACGGGACCTTCTTCTCAGGAGATAATCACTACCACCCTGGAGGACG
Seq C2 exon
TACCCAGCTACCCTCCCGAAAATGTCCAAGCCATAGCAACCTCACCAGAAAGCATATCAATCTCCTGGTCCACGCTGTCCAAGGAGGCCTTGAATGGGATTCTCCAGGGGTTCAGGGTCATCTACTGGGCCAACCTCATAGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'28-21,'28-20,30-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=0.146 C2=0.140
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(22.0=83.3)
A:
PF0004116=fn3=PD(75.8=85.2)
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTCCACCTCAGGAAGT
R:
CTCCGTCTATGAGGTTGGCCC
Band lengths:
214-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]