DreEX0028394 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6186509-6196239:-
Coord C1 exon
chr15:6196169-6196239
Coord A exon
chr15:6191028-6191268
Coord C2 exon
chr15:6186509-6186655
Length
241 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTGTATCTTTCCAGCCC
3' ss Score
8.06
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CACCCGACGGAGCTCCTCAAGACGTGCAGCTGGAAGCGATCTCATCCCAGGGCATCAAAGTCACATGGAAG
Seq A exon
CCCCCCCACAAACACTTGCAAAATGGCTTGATCCGAAGCTACCAAGTGTGCTATCGGGAGTTCGGGACAGGAGGCAGCCCACAATACAACACCATCAACGTCGACACCACGGGAGACATTGAAACCCTCACTCTTGATAACCTGAAGAAGTACACGCAGTATGAGGTGCGGGTGCAAGCAGCCAATCGAGCAGGAATGGGGCCAACCTCAGAGGAAATCACCATCACCACGCTAGAGGATG
Seq C2 exon
TTCCCAGTCGCCCACCTGAAAACGTTGTGACCACAGCTACGACCCCTGAGACCATCTCTCTGTCATGGTCTGCACTGCCCAAAGAAGCCCTCAACGGCATGCTGCTCGGATACCGTGTCATCTTCTGGGCCAACCTACCTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.389 C2=0.303
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(22.0=83.3)
A:
PF0004116=fn3=PD(75.8=85.2)
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACGGAGCTCCTCAAGA
R:
CATCAGGTAGGTTGGCCCAGA
Band lengths:
212-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]