GgaEX6004383 @ galGal3
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111771894-111779671:-
Coord C1 exon
chr1:111779601-111779671
Coord A exon
chr1:111773723-111773963
Coord C2 exon
chr1:111771894-111772040
Length
241 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCATATCCTGTTTAGGCT
3' ss Score
8.28
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CTCCTGATGGTCCACCCCAGGATGTTCAGCTTGAGCCTATATCTTCACAAAGCATTAGGGTCACCTGGAAG
Seq A exon
GCTCCGAAGAAGCACTTGCAAAATGGAATAATTCGTGGATACCAGATAGGTTATCGGGAGTACAGTGCAGGTGGCAATTTCCAGTTCAACATCATCAGTATTGATACCACAGGGGACAGCGAAGTTTATACCCTGAATAACCTGAAGAAATTCACACAATATGGCATGGTAGTTCAAGCTTGTAACCGGGCTGGAATAGGACCTTCTTCTCAGGAAATCATCACCACTACTCTTGAGGATG
Seq C2 exon
TTCCCAGCTGCCCTCCAGGGAACGTGCAAGCCACTGCCACATCACCAGAAACCATTTCTATTTCTTGGTCAACGCTGGCAAAAGAAACTCTGAATGGGATTCTGCAAGGATTCAGGGTTATCTACTGGGCCAATCTCTTGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.074 C2=0.200
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(22.0=83.3)
A:
PF0004116=fn3=PD(75.8=85.2)
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTCCACCCCAGGATGTT
R:
TCCATCCAAGAGATTGGCCCA
Band lengths:
212-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]