MmuEX6063651 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96683720-96697528:-
Coord C1 exon
chr16:96697458-96697528
Coord A exon
chr16:96685215-96685455
Coord C2 exon
chr16:96683720-96683866
Length
241 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTCTCCTGTTTAGGCT
3' ss Score
11.24
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CTCCTGATGGTCCACCTCAGGAAGTTCACTTGGAACCCACCTCATCTCAGAGTATCAGGGTTACCTGGAAG
Seq A exon
GCTCCCAAGAAACACTTACAAAACGGGATCATTCGCGGCTACCAAATAGGCTACCGGGAGTACAGCACGGGGGGTAACTTCCAGTTCAACATCATCAGTATCGACACCACCGGGGACAGCGAAGTGTACACCCTGGACAACCTGAATAAGTTCACGCAGTATGGCCTGGTAGTACAGGCTTGCAACCGGGCCGGCACAGGACCTTCTTCTCAGGAGATCATTACCACCACTCTGGAGGATG
Seq C2 exon
TACCCAGCTACCCTCCTGAAAATGTCCAAGCCATAGCAACCTCACCAGAAAGCATATCAATCTCCTGGTCCACACTGTCCAAGGAGGCCTTGAATGGGATTCTCCAGGGGTTCAGGGTCATCTACTGGGCCAACCTCATAGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'26-26,'26-25,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=0.140 C2=0.127
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(22.0=83.3)
A:
PF0004116=fn3=PD(75.8=85.2)
C2:
PF0004116=fn3=PU(52.3=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTCCACCTCAGGAAGT
R:
CTCCGTCTATGAGGTTGGCCC
Band lengths:
214-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types