BtaEX6003673 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141693682-141712966:-
Coord C1 exon
chr1:141712790-141712966
Coord A exon
chr1:141700531-141700561
Coord C2 exon
chr1:141693682-141693797
Length
31 bp
Sequences
Splice sites
3' ss Seq
TATTAGCTTTCTTTCCCCAGATG
3' ss Score
9.04
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTACAATCCCCCCACTCATTAAGTCAGTTGTCCAAAGCGATGAAGGGCTGACAACCAACGAGGGGCTCAAGATGCTGGTGACCATCTCCTGTATCCTGGTGGGGGTCCTGATGCTGTTTGTGCTCCTGCTGGTGGTTCGGAGGAGGAGGCGTGAGCAGAGGCTGAAGCGGCTGAGAG
Seq A exon
ATGCAAAGAGTTTAGCTGAAATGCTCATGAG
Seq C2 exon
TAAAAATACCCGGACTTCAGACACCTTGAGCAAGCAGCAGCAAACCCTGAGGATGCATATTGACATACCCAGGGCTCAGCTCTTGATTGAAGAGAGAGATACAATGGAAACCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCTGTTTGTGCTCCT
R:
GTTTGCTGCTGCTTGCTCAAG
Band lengths:
116-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]