MmuEX0015713 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96622709-96640914:-
Coord C1 exon
chr16:96640738-96640914
Coord A exon
chr16:96629368-96629398
Coord C2 exon
chr16:96622709-96622824
Length
31 bp
Sequences
Splice sites
3' ss Seq
ATCAGCTTTCTCTTCCCCAGATG
3' ss Score
10.31
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTACTGCTCTTTGTGCTTCTGCTGGTTGTGCGGAGGAGACGGCGAGAGCAGAGGCTGAAGAGGCTGAGAG
Seq A exon
ATGCAAAGAGTTTAGCTGAAATGCTCATGAG
Seq C2 exon
CAAAAACACACGGACTTCAGATACCTTAAGCAAACAGCAGCAGACTTTGAGAATGCACATTGATATACCCAGGGCTCAGCTTTTGATTGAAGAGAGAGACACAATGGAGACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'43-44,'43-42,44-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTTGTGCTTCTGCTGG
R:
TCAAAGTCTGCTGCTGTTTGC
Band lengths:
116-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types