DreEX6075138 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6169056-6169565:-
Coord C1 exon
chr15:6169389-6169565
Coord A exon
chr15:6169255-6169285
Coord C2 exon
chr15:6169056-6169171
Length
31 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTCTTCATTGTACAGATG
3' ss Score
9
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCACAATTGCTCCATTGCCAAAGAGCGTGGACCCCAGCCAGGAGAACAGGCAGGGAAATGAAGGACTTAAGATGATGGTCACGATCATCTGCATTCTGGTGGCAATCTGCATGGTCTTCATCGTTCTTCTAGTATTGAGGAGGAGGAGAAGAGAGCAGAGACTCAAGAGATTACGAG
Seq A exon
ATGCTAAGAGCCTAGCGGAGATGCTAATGAG
Seq C2 exon
TAAAAATGCACGTACACCTGACACCGTGAACAAGCAGCAGCAGACTCTGCGGATGCACATCGATATCCCACGTGCTCAGCTACTCATCGAGGAGAGGGACACTATGGAGACAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'30-30,'30-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.455 C2=0.570
Domain overlap (PFAM):
C1:
PF066797=DUF1180=FE(75.3=100),PF083746=Protocadherin=FE(39.2=100),PF0200911=Rifin_STEVOR=PU(85.5=79.7),PF145841=DUF4446=PU(45.7=62.7)
A:
PF066797=DUF1180=PD(0.1=0.0),PF083746=Protocadherin=FE(6.8=100),PF0200911=Rifin_STEVOR=PD(10.9=54.5),PF145841=DUF4446=FE(12.3=100)
C2:
PF083746=Protocadherin=FE(26.4=100),PF145841=DUF4446=PD(38.8=77.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTGCATTCTGGTGGCAA
R:
GGTGTCAGGTGTACGTGCATT
Band lengths:
118-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]