GgaEX6004387 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107627813-107639749:-
Coord C1 exon
chr1:107639573-107639749
Coord A exon
chr1:107633634-107633664
Coord C2 exon
chr1:107627813-107627928
Length
31 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGTTTTCTTCTAGATG
3' ss Score
12.61
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTACAATCCCTCCACTTATTAAGTCAGTTGTGCAAAGTGAGGAGGGGCTGGCAACCAACGAAGGGCTAAAGATGCTGGTGACCATTTCCTGTATCTTGGTTGGGGTCTTACTGCTTTTTGTGATGCTGCTGATTGTGCGGAGAAGAAGGAGGGAGCAGAGGCTGAAGAGGCTGCGAG
Seq A exon
ATGCAAAGAGTTTGGCTGAAATGCTCATGAG
Seq C2 exon
CAAGAATACCAGGACGTCAGACACACTTAACAAGCAACAGCAAACACTGAGGATGCACATAGACATTCCCAGAGCACAGCTTCTGATTGAGGAGAGGGACACGATGGAGACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'42-37,'42-36,43-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGAGGGAGCAGAGG
R:
ATCAGAAGCTGTGCTCTGGGA
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]