RnoEX6056703 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37035033-37053225:-
Coord C1 exon
chr11:37053049-37053225
Coord A exon
chr11:37041719-37041749
Coord C2 exon
chr11:37035033-37035148
Length
31 bp
Sequences
Splice sites
3' ss Seq
TATTAGTTTTCTCTCCCCAGATG
3' ss Score
9.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTGCTGCTCTTTGTGCTTCTGCTGGTGGTGCGAAGGAGACGGAGGGAGCAGAGGCTGAAGAGGCTGAGAG
Seq A exon
ATGCAAAGAGTTTAGCTGAGATGCTCATGAG
Seq C2 exon
CAAGAACACACGGACTTCAGATACCTTGAGCAAACAGCAACAGACTCTGAGGATGCACATTGATATACCCAGGGCTCAGCTTTTGATTGAAGAGAGAGACACAATGGAGACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'43-36,'43-34,44-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGTGCTTCTGCTGGTGG
R:
TGCATCCTCAGAGTCTGTTGC
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]