GgaEX6004387 @ galGal3
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111716072-111728613:-
Coord C1 exon
chr1:111728437-111728613
Coord A exon
chr1:111721893-111721923
Coord C2 exon
chr1:111716072-111716187
Length
31 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGTTTTCTTCTAGATG
3' ss Score
12.61
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTACAATCCCTCCACTTATTAAGTCAGTTGTGCAAAGTGAGGAGGGGCTGACAACCAACGAAGGGCTAAAGATGCTGGTGACCATTTCCTGTATCTTGGTTGGGGTCTTACTGCTTTTTGTGATGCTGCTGATTGTGCGGAGAAGAAGGAGGGAGCAGAGGCTGAAGAGGCTGCGAG
Seq A exon
ATGCAAAGAGTTTGGCTGAAATGCTCATGAG
Seq C2 exon
CAAGAATACCAGGACGTCAGACACACTTAACAAGCAACAGCAAACACTGAGGATGCACATAGACATTCCCAGAGCACAGCTTCTGATTGAGGAGAGGGACACGATGGAGACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGAGGGAGCAGAGG
R:
ATCAGAAGCTGTGCTCTGGGA
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]