BtaEX6003707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143231904-143235417:-
Coord C1 exon
chr1:143235331-143235417
Coord A exon
chr1:143234533-143234646
Coord C2 exon
chr1:143231904-143232030
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGTTTCCCTGAAAGTGG
3' ss Score
5.83
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
AGACTAAGAAAGCCCTGTGCATCACCTTCACCCTGGTGGTCCTGCTGGCAGGAGCAATCCTTGCCGCCGTCCTCCTCTGGAAGTACA
Seq A exon
TGGAGGACGAGTGTTCAGGGATGGAGTGCAGCTCCTCCGGGACCTGTGTTAGCCCCTCTCTCTGGTGCGATGGCATCCTGCACTGCCCCAGTGGCGAGGACGAGAACCGCTGCG
Seq C2 exon
TTCGCCTCTATGGACCGAACTTCATCCTTCAGGTGTACTCAGCACAGAGGAAGTCCTGGCACCCCGTGTGCCAGGACGACTGGAGTGAGAGCTACGGGAGGGCGGCCTGCCAGGACATGGGCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132-'2-7,'2-6,3-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126692=P12=PU(23.8=66.7)
A:
PF126692=P12=FE(45.2=100),PF0005713=Ldl_recept_a=WD(100=89.7)
C2:
PF126692=P12=PD(29.8=58.1),PF154941=SRCR_2=PU(39.6=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTAAGAAAGCCCTGTGCA
R:
TAGCCCATGTCCTGGCAGG
Band lengths:
211-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]