HsaEX0066072 @ hg19
Exon Skipping
Gene
ENSG00000184012 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:11876]
Coordinates
chr21:42852403-42861520:-
Coord C1 exon
chr21:42861434-42861520
Coord A exon
chr21:42860321-42860440
Coord C2 exon
chr21:42852403-42852529
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTTTTCTCTGCAAGTGG
3' ss Score
5.37
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGACTAAGAAAGCACTGTGCATCACCTTGACCCTGGGGACCTTCCTCGTGGGAGCTGCGCTGGCCGCTGGCCTACTCTGGAAGTTCA
Seq A exon
TGGGCAGCAAGTGCTCCAACTCTGGGATAGAGTGCGACTCCTCAGGTACCTGCATCAACCCCTCTAACTGGTGTGATGGCGTGTCACACTGCCCCGGCGGGGAGGACGAGAATCGGTGTG
Seq C2 exon
TTCGCCTCTACGGACCAAACTTCATCCTTCAGGTGTACTCATCTCAGAGGAAGTCCTGGCACCCTGTGTGCCAAGACGACTGGAACGAGAACTACGGGCGGGCGGCCTGCAGGGACATGGGCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184012_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126692=P12=PU(21.4=70.0)
A:
PF126692=P12=FE(40.8=100),PF0005713=Ldl_recept_a=WD(100=92.7)
C2:
PF126692=P12=PD(36.7=83.7),PF154941=SRCR_2=PU(39.6=88.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTGCATCACCTTGACC
R:
TATAGCCCATGTCCCTGCAGG
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)