GgaEX0023792 @ galGal4
Exon Skipping
Gene
ENSGALG00000016144 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:HGNC:11876]
Coordinates
chr1:108307020-108309941:-
Coord C1 exon
chr1:108309858-108309941
Coord A exon
chr1:108308361-108308480
Coord C2 exon
chr1:108307020-108307149
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCTCTGCCCTTGCAGTCG
3' ss Score
9.87
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCATAAAGAAAATCGTAATAATTACATTATCCATTTTACTAGTCATCTGTTGTGCAATTGCTGCTTTCCTCATCTGGTATTTTG
Seq A exon
TCGAGAATCGTTGTCTCGGATCCTTAATAGAGTGTGGATCTTCGGGAGTGTGCATTTCTCCCTCAGTGTGGTGTGATGGAGTGACTGACTGCCCAAATGGGGAGGATGAAAACCGGTGTG
Seq C2 exon
TTAGACTTTATGGACCAAACTTCATTCTCGAAGTTTATTCGCCTGTCAGCCAAACGTGGTACCCTGTTTGTCAAGATGACTGGACTGATGATTTTGGAAAGATTGCATGTGAAGACATGGGCTACAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=92.7)
C2:
PF154941=SRCR_2=PU(40.2=88.6)
Main Skipping Isoform:
ENSGALT00000026003fB13043
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATTTTACTAGTCATCTGTTGTG
R:
ACATTGTAGCCCATGTCTTCACA
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]