MmuEX0048168 @ mm9
Exon Skipping
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97800137-97813117:-
Coord C1 exon
chr16:97813031-97813117
Coord A exon
chr16:97812427-97812546
Coord C2 exon
chr16:97800137-97800263
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCAATACAATGCCAGGGG
3' ss Score
2.74
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGTCTAAGAAATCGCTGTGTTTAGCCCTCGCCCTGGGCACTGTCCTCACGGGAGCTGCTGTGGCTGCTGTCTTGCTTTGGAGGTTCT
Seq A exon
GGGACAGCAACTGTTCTACGTCTGAGATGGAGTGTGGGTCTTCAGGCACATGCATCAGCTCTTCTCTCTGGTGTGACGGGGTAGCACATTGTCCCAACGGAGAAGATGAGAACCGTTGTG
Seq C2 exon
TTCGTCTCTACGGACAAAGCTTCATCCTCCAGGTTTACTCATCTCAGAGGAAAGCCTGGTATCCCGTGTGCCAGGATGATTGGAGTGAGAGCTACGGGAGAGCAGCATGTAAAGACATGGGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-'10-6,'10-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=92.7)
C2:
PF154941=SRCR_2=PU(39.6=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAAGAAATCGCTGTGTTTAGCC
R:
GTCTTTACATGCTGCTCTCCCG
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: