RnoEX0092118 @ rn6
Exon Skipping
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38077309-38083383:-
Coord C1 exon
chr11:38083297-38083383
Coord A exon
chr11:38082695-38082814
Coord C2 exon
chr11:38077309-38077435
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCGATCCAATGCCAGGGG
3' ss Score
5.34
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AATCTAAGAAATCCATGCTTGTCGCCCTGGCCCTGGGCACTGTCCTCGCCGGTGCTGCTGTGGCTGCTGGCTTGCTTTGGAAGTTCT
Seq A exon
GGGACAGCAAGTGCTCTTCATCAGAGATGGAGTGTGGGTCTTCAGGGACATGTATCAGCTCCTCCCTCTGGTGTGACGGAGTGTCACAGTGTCCCAACGGGGAAGACGAGAACCGGTGTG
Seq C2 exon
TTCGCCTCTATGGAACAAGCTTCACCCTCCAGGTTTACTCATCTCAGAGGAAAGCCTGGTATCCCGTCTGCCAGGATGATTGGAATGAGAGCTACGGGAGAGCAGCATGTAAAGACATGGGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976-'11-7,'11-6,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=92.7)
C2:
PF154941=SRCR_2=PU(39.6=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGAAATCCATGCTTGTCGCC
R:
ATGTCTTTACATGCTGCTCTCCC
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]