DreEX0079999 @ danRer10
Exon Skipping
Gene
ENSDARG00000098686 | tmprss2
Description
transmembrane protease, serine 2 [Source:ZFIN;Acc:ZDB-GENE-041212-48]
Coordinates
chr10:38771594-38775109:+
Coord C1 exon
chr10:38771594-38771686
Coord A exon
chr10:38774774-38774890
Coord C2 exon
chr10:38774979-38775109
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCATCTGTATTATAGGGT
3' ss Score
8.37
5' ss Seq
GCTGTGAGA
5' ss Score
1.65
Exon sequences
Seq C1 exon
TTTCCAGGAGAAAAAAATGGCCATATATTGTGGGCACAGTCGTCACACTGCTGGTCATTGCTGGAGTCGTAGTTGCGGTGCTTTGGTTTTATG
Seq A exon
GGTTGTTTGCGTGTTTGCAAGGACGGATGTGTGAAGCAGATAAAAAGTGTGTCAGTGTGTCGCTGTGGTGTGACGGTACGGTGGACTGTCCGTCAGGAGAAGATGAAGCTCAATGCT
Seq C2 exon
ATCGTCTGTACGGACCTAATTTCCTCCTTCAGAAGTACTCAAATGTGAGCGCTAATTGGAAAAATGTCTGTTCAGATGGATTTAATGACAACCTGGCCAAGCAAGCCTGTGCGGAGATCGGATACAAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098686_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.5)
C2:
PF154941=SRCR_2=PU(81.2=88.6),PF154941=SRCR_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATATATTGTGGGCACAGTCGT
R:
ACTTGTATCCGATCTCCGCAC
Band lengths:
202-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]