BtaEX6003881 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017060 | ITGB2
Description
Bos taurus integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) (ITGB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175781]
Coordinates
chr1:145104446-145107224:-
Coord C1 exon
chr1:145107022-145107224
Coord A exon
chr1:145105076-145105242
Coord C2 exon
chr1:145104446-145104889
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACACCACATGTGTGCCCTAGAGT
3' ss Score
6.08
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCCCTGCACAGAGTGCCTGAAGTTCGACAAGGGCCCCTTCGCCAAGAACTGCAGCGCAGCGTGCGGGCAGACGAAGCTGCTGTCCAGCCCGGTGCCCGGCCGCAAGTGCAAGGAGCGCGACTCCGAGGGCTGCTGGATGACCTACACCCTGGTGCAGCGCGACGGGCGGGACAGATACGACGTGCACGTGGACGACATGCTCG
Seq A exon
AGTGTGTGAAGGGCCCCAACATCGCTGCCATCGTGGGGGGCACCGTGGGGGGCGTCGTGCTCGTCGGCATCCTCCTGCTGGTCATCTGGAAGGCCCTGACACACCTGAGCGACCTCAGGGAGTACCATCGCTTTGAGAAGGAGAAGCTCAAGTCCCAGTGGAACAAC
Seq C2 exon
GATAACCCTCTTTTCAAGAGTGCCACCACGACAGTCATGAACCCTAAGTTTGCCGAGAGTTAGGGGTGCCCGGTGAAGACAAGGCCTTCTGCACCACCCAGATGGGAACACCCCCTCTCCACGTCCCCTCCAGCAGGCTGACCGTGACCCCGCTGCCTCGTGGACGTGGCTGACAACTTCACCGTTAACCAAAAATGCACTGCTTTTTCTGCCCCAGAATGATGGGCGTGGCCAGGTTATTCTATGGGCTCATGGTAAGGGCCAGCCTACCCCTTCTGATATGAATGACTTTTGATAGCAAGTCAGAGAAGGAATTGCCTACATTTTGTATGGTTACACACAGGTCCTTTGTAAAAATTAGTACAGCAGTCTGATGAAGAATTATTTATGTGTGAACTTCTCAGGGTATGAAGTTACATCCCCTTGGTTATGCTGCCCCCAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017060-'20-18,'20-16,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(86.1=100)
A:
PF079657=Integrin_B_tail=PD(7.6=10.7),PF087256=Integrin_b_cyt=PU(54.3=44.6)
C2:
PF087256=Integrin_b_cyt=PD(41.3=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGAAGTTCGACAAGGG
R:
ACCCCTAACTCTCGGCAAACT
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]